comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]
20170927_LU50_Immortalized_DIA_CTRL_R2.mzML	1		dia_ctrl_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_CTRL_R3.mzML	1		dia_ctrl_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_IL1BETA_R1.mzML	2		dia_il1beta_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_IL1BETA_R2.mzML	2		dia_il1beta_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_IL1BETA_R3.mzML	2		dia_il1beta_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_LPS_R1.mzML	3		dia_lps_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_LPS_R2.mzML	3		dia_lps_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_LPS_R3.mzML	3		dia_lps_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_POOL_R1.mzML	4		dia_pool_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_POOL_R2.mzML	4		dia_pool_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_POOL_R3.mzML	4		dia_pool_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_TNF_R1.mzML	5		dia_tnf_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20170927_LU50_Immortalized_DIA_TNF_R2.mzML	5		dia_tnf_immortalized_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20180523_LU50CM22_DIA_PHA_CTRL_R1.mzML	6		dia_ctrl_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20180523_LU50CM25_DIA_PHA_LPS_R1.mzML	7		dia_lps_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.0214620180523_LU50CM30_DIA_PHA_LPS_R2.mzML	7		dia_lps_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20180523_LU50CM32_DIA_PHA_CTRL_R2.mzML	6		dia_ctrl_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20180523_LU50CM39_DIA_PHA_LPS_R3.mzML	7		dia_lps_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146
20180523_LU50CM40_DIA_PHA_CTRL_R3.mzML	6		dia_ctrl_primary_astrocyte	Orbitrap Fusion Lumos	40.0 ppm	12.0 ppm	NT=Trypsin/P;CS=(?<=[KR])	NT=Oxidation;MT=Variable;PP=Anywhere;TA=M;MM=15.99490	NT=Acetyl;MT=Variable;PP=Protein N-term;MM=42.01060	NT=Carbamidomethyl;MT=Fixed;PP=Anywhere;TA=C;MM=57.02146